🚀 go-pugleaf

First, There is a limit to the number of aliens in containment you can only
have ten different types(i.e. Sectoid soldiers, or muton engineers) after
that, they dont show.

Second, a question, did you hit the commander with any other kind of weapon
before stunning him? if so, he could have had a critical wound and died from
that.

Third, sometimes, a string gets loaded wrong during a battle and any save
after that load can cause the game to really screw up. the only way to
remedy this is to go back to a save before (long before sometime :>) the
battle and try again.

Hope this helps
Matthew
"The Etheral Slayer"